Sequence Ontology terminology for gene regulation
نویسندگان
چکیده
The Sequence Ontology (SO) is a structured, controlled vocabulary that provides terms and definitions for genomic annotation. Gene Regulation Ensemble Effort the Knowledge Commons (GREEKC) initiative has gathered input from many groups of researchers, including SO, (GO), gene regulation experts, with goal curating information about how expression regulated at molecular level. Here we discuss recent updates to SO reflecting current knowledge. We have developed more accurate human-readable (also known as classes), new definitions, relationships related genes. New findings continue give us insight into biology regulation, order events, participants in those events. These support logical reasoning understanding
منابع مشابه
Improving the Sequence Ontology terminology for genomic variant annotation
BACKGROUND The Genome Variant Format (GVF) uses the Sequence Ontology (SO) to enable detailed annotation of sequence variation. The annotation includes SO terms for the type of sequence alteration, the genomic features that are changed and the effect of the alteration. The SO maintains and updates the specification and provides the underlying ontologicial structure. METHODS A requirements ana...
متن کاملTerminology with Ontology for Nlp
This essay starts with an illustration of ontology with an example of representing the meaning of word, versement. It explores possible uses of ontology information for human translators and machine language processing, such as semantic interpretation, interface to databases, response generation, dialogue management. The terminology with ontological information is valuable semantic resources fo...
متن کاملOntology Via Terminology?
The Encyclopaedia Britannica’s (EB) definition of ontology as “the theory or study of being as such; i.e., of the basic characteristics of all reality” has been overtaken in recent years by the use of “ontology” to describe the representation of information such that it can be reasoned over, which some consider to be “knowledge”. Sowa’s view of ontology as “the study of the categories of things...
متن کاملLinking Molecular Imaging Terminology to the Gene Ontology (GO)
The rapidly developing domain of molecular imaging represents the merging of current advances in the fields of molecular biology and imaging research. Despite this merger, an information gap continues to exist between the scientists who discover new gene products and the imaging scientists who can exploit this information. The Gene Ontology (GO) Consortium seeks to provide a set of structured t...
متن کاملOnLiT: An Ontology for Linguistic Terminology
Understanding the differences underlying the scope, usage and content of language data requires the provision of a clarifying terminological basis which is integrated in the metadata describing a particular language resource. While terminological resources such as the SIL Glossary of Linguistic Terms, ISOcat or the GOLD ontology provide a considerable amount of linguistic terms, their practical...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Biochimica et biophysica acta
سال: 2021
ISSN: ['1874-9399', '1876-4320']
DOI: https://doi.org/10.1016/j.bbagrm.2021.194745